Split AGENTS.md into area guides so Codex reads it in full again (#1046)

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# AGENTS.md
These instructions cover the model knowledge in `app/MindWork AI Studio/Models/`. They add to the
`AGENTS.md` in the repository root, which applies here as well.
## Model Capabilities
When adding, changing, or removing model knowledge, keep these parts in sync:
- `app/MindWork AI Studio/Models/<Vendor>/<Family>.cs` for the family itself. Creating the class is enough — the source generator in `app/SourceGeneratedMappings/` collects every non-abstract `ModelFamily` and `IModelHost` at compile time, so there is no registration list. Do not add reflection here; `PublishTrimmed` is on.
- `app/Tests/Models/Corpus/` for the model IDs the family covers, marked as either unchanged or expected to change. A porting difference which nobody declared is what the corpus exists to catch.
- `app/MindWork AI Studio/Models/Kinds/` when the change is about what kind of model something is, rather than what it can do. These are ordinary rules of the same engine.
- `app/MindWork AI Studio/Models/Hosting/Hosts/` when a provider wraps model names or cannot pass an API through. A host unwraps and trims the transport; it states nothing about the model itself.
- `app/MindWork AI Studio/Plugins/models/plugin.lua` when a new field can be declared by an organization, and `app/MindWork AI Studio/Plugins/configuration/plugin.lua` when it can be overridden per provider instance.
Rules are never tried in order: specificity is computed from the rule, and two rules of equal specificity on one name fail the test suite. State how a model reasons with `Reasoning(...)` — the three reasoning capabilities are override vocabulary and must never appear in a profile. Every family and every host has to name the page it was read from and the day somebody read it; `dotnet run verify-models` reports the ones which have gone stale.
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# AGENTS.md
These instructions cover the databases in `app/MindWork AI Studio/Tools/Databases/`. They add to the
`AGENTS.md` in the repository root, which applies here as well.
## Databases
Local RAG runs on two databases, addressed through `DatabaseRole`:
- **`VECTOR_STORE`** — Qdrant Edge through the `qdrant-edge` crate, running **in-process inside the
Rust runtime**. There is no sidecar process, no port 6333 and no Qdrant API key; .NET reaches it
over the internal runtime API (`/system/qdrant-edge/*`, see `runtime/src/qdrant_edge_database.rs`),
secured by the same TLS and API token as every other runtime call. One store per data source,
named `rag_<data source guid>`, holding a single named vector `embedding` per point.
- **`INDEX_STORE`** — SQLite at `<data directory>/databases/sqlite/rag-index.sqlite3`, reached
through EF Core. It holds the data sources, the file fingerprints, the chunk texts and an FTS5
index over them, plus the files which permanently failed to index.
When working on these, keep in mind:
- **`GetDisplayInfo()` feeds the information page.** A new diagnostic value belongs in the client
that knows it, not in `Pages/Information.razor.cs`. The page renders whatever label-value pairs it
receives and stays free of per-database knowledge.
- **Let every probe in `GetDisplayInfo()` catch its own failure.** When the method throws, the page
replaces the *entire* block with the fallback client, so one unreadable value costs all the others
as well.
- **Raw SQL against SQLite goes through `context.Database.GetDbConnection()`**, not through
`SqlQueryRaw<T>`: that one expects a column named `Value` and wraps the statement, so a `PRAGMA`
never works with it.
- **A new EF Core migration needs a `[DynamicDependency]`** in `IndexStoreSchemaMigrator`, because
`PublishTrimmed` is on and the migration type would otherwise be trimmed away. The "Schema version"
line on the information page shows the applied and pending counts, so a forgotten entry becomes
visible there.
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# AGENTS.md
These instructions cover the plugin system in `app/MindWork AI Studio/Tools/PluginSystem/` and what
configuration plugins can provide. They add to the `AGENTS.md` in the repository root, which applies here
as well.
## Configuration plugins
Plugins can configure:
- Self-hosted LLM providers
- Update behavior
- Preview features visibility
- Preselected profiles
- Chat templates
- etc.
Configuration plugins provide three kinds of values:
- **Managed settings:** simple values such as booleans, numbers, strings, enums, lists, or sets handled through `ManagedConfiguration`. These values may be locked or used as organization defaults. Which configuration plugin owns a locked setting is persisted in `Data.ManagedLockedConfigurations`, and organization defaults are tracked in `Data.ManagedEditableDefaults`. Both are cleaned up generically by `ManagedConfiguration.CleanupLeftOverManagedConfigurations(...)` when the owning plugin is gone. The value a setting had before a configuration plugin took it over is kept in `Data.ManagedUserValueSnapshots` and restored by that same clean-up, so removing a plugin hands the user's own value back instead of the app default.
- **Managed configuration objects:** complex Lua tables that are persisted into `SettingsManager.ConfigurationData`, implement `IConfigurationObject`, and are cleaned up through `PluginConfigurationObject.CleanLeftOverConfigurationObjects(...)`. Examples include providers, profiles, chat templates, data sources, and document analysis policies.
- **Live plugin content:** complex Lua tables that implement `ILivePluginContent` and are read live from running plugins instead of being persisted to `ConfigurationData`. Examples include `MANDATORY_INFOS` and `INTRODUCTIONS`. If live plugin content creates persistent side data, add a dedicated cleanup path for that side data, like mandatory-info acceptances.
When adding configuration plugin capabilities:
- For managed settings, update the corresponding data class in `app/MindWork AI Studio/Settings/DataModel/` to call `ManagedConfiguration.Register(...)` and process the setting in `PluginConfiguration.TryProcessConfiguration`. Cleaning up the setting when its configuration plugin was removed needs no extra step: `ManagedConfiguration.CleanupLeftOverManagedConfigurations(...)` iterates all registered settings. Do not add per-setting cleanup calls to `PluginFactory.Loading.LoadAll`.
- For managed configuration objects, update `PluginConfigurationObject.cs` and `PluginConfigurationObjectType.cs`, persist them in the appropriate `ConfigurationData` collection, and add cleanup via `PluginConfigurationObject.CleanLeftOverConfigurationObjects(...)`.
- For live plugin content, add a data type implementing `ILivePluginContent`, parse it in `PluginConfiguration`, expose it through `PluginFactory`, and add any required cleanup only for persistent side data.
- Always document the new capability in `app/MindWork AI Studio/Plugins/configuration/plugin.lua`.
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# AGENTS.md
These instructions cover the indexing pipeline in `app/MindWork AI Studio/Tools/Services/Indexing/` and
`DataSourceEmbeddingService`. They add to the `AGENTS.md` in the repository root, which applies here as
well.
## Indexed data sources
The parts:
- **`IIndexedDataSource`** (`Settings/`) - what indexing needs to know about a data source: confidence level,
embedding provider and chunk settings. `IDataSourceBase` is what every data source has. Implement
`IDataSource` on top only when classic RAG, Semantic Search and the agents should see the data source. A data
source kept in a list of its own implements `IIndexedDataSource` alone, and the compiler keeps it out of
`DataSources`.
- **`IIndexedSourceIndexer`** - one per kind of data source. `Supports` claims the data sources, `ProcessAsync`
finds and reads the documents of one run, and `TrackChanges` / `StopTracking` notice changes on their own.
`FileSourceIndexer` is the reference: a file system watcher per data source, fingerprints over path, size and
write time.
- **`IndexedRunContext`** - one prepared run: both stores, the embedding provider, the manifest and the
collection. `IndexDocumentAsync` embeds and stores one document; the cleanup methods remove what a failed
attempt left behind.
- **`EmbeddingDocument`** - one document: its key, its index row, its display name, and how to read its chunks.
- **`DocumentRunProgress`** - counts the documents, records indexed and failed ones in the stores, publishes the
status and completes the run.
- **`TextChunker`** - cuts text into chunks the embedding provider accepts. Pick one of its strategies; do not
write a chunker of your own.
To add a kind of data source:
1. Write its indexer in `Tools/Services/Indexing/` and create it in `DataSourceEmbeddingService.CreateIndexers`,
which hands every indexer the same `TextChunker`.
2. Gate it in `IsSupportedIndexedSource`, behind a preview feature of its own while it is new.
3. When the data source is not kept in `DataSources`, add its list to `GetConfiguredIndexedSources`. Every lookup
by id and every pass over all data sources goes through it: the startup hash check,
`QueueAllInternalDataSourcesAsync` and `RefreshWatchers`.
4. Keep whatever the kind has to remember beyond its documents in tables of its own in the index store, added
by an EF Core migration (see `app/MindWork AI Studio/Tools/Databases/AGENTS.md`).
5. Report every status through `DocumentRunProgress`, so all rows of the embedding page behave alike.
Rules which are easy to break:
- **A document key is not a path.** Only files use their full path as the key. Never pass a key through the
`Path` APIs: on Windows, `Path.GetFullPath` reads a key like `mail:…` as a file with an alternate data stream.
- **Ids and signature are pinned.** The formats in `IndexedDocumentIds` and the embedding signature
(`DataSourceEmbeddingService.BuildEmbeddingSignature`) are fixed by tests, because every stored chunk and every
index depends on them. When the metadata stored next to a chunk changes, raise `CHUNK_METADATA_VERSION`
deliberately: that rebuilds every index.
- **The service decides when, the indexer decides how.** Whether changes are tracked at all depends on the
automatic refresh setting and the startup hash check, and only the embedding service decides that.
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# AGENTS.md
These instructions cover the tool calling system in `app/MindWork AI Studio/Tools/ToolCallingSystem/`. They
add to the `AGENTS.md` in the repository root, which applies here as well; its "Tool Calling System"
section explains how selections name tool collections.
## Tool Calling System
When adding, changing, or removing model-driven tools, keep these parts in sync:
- `app/MindWork AI Studio/Tools/ToolCallingSystem/ToolCallingImplementations/` for the `IToolImplementation` class, which states its own `ToolDefinition` through `GetDefinition()`, written with `ToolSettingsSchemaBuilder` for its settings and `ToolParameterSchemaBuilder` for the arguments the model passes. There are no tool definition files; a tool arriving from elsewhere brings an `IToolDefinitionSource` instead.
- `app/MindWork AI Studio/Program.cs` for DI registration of the implementation. Registering it as an `IToolImplementation` is enough, because `CodeToolDefinitionSource` collects the definitions of all of them.
- An `IToolCollection` next to the tools, registered in `Program.cs`, when tools only make sense together.
- `app/MindWork AI Studio/Tools/ToolCallingSystem/ToolSelectionRules.cs` when the shared tool-call limits change. A tool's own minimum provider confidence belongs in its definition, or in the definition of its collection, not here.
- `app/MindWork AI Studio/Tools/ToolCallingSystem/ToolSettingsOptionSources.cs` when a tool setting offers a fixed choice the app maintains, such as languages. Prefer this over spelling the values out in the settings schema; it keeps the list in one place and gives the user translated names.
- `app/MindWork AI Studio/Plugins/configuration/plugin.lua` to document each setting's field name, meaning, and data type. Tool settings need no code to be centrally manageable: an organization addresses them by `"<toolId>.<fieldName>"` in `DataTools.LockedToolSettings` or `DataTools.DefaultToolSettings`.
Tool implementations must treat model-provided arguments as untrusted input. Validate settings and arguments, protect secrets with `SensitiveTraceArgumentNames`, use `ToolExecutionBlockedException` for intentional policy blocks, and check provider confidence before returning sensitive data to the model.
A tool which belongs to a preview feature returns false from `IToolImplementation.IsAvailable` while the preview is switched off; the registry then leaves it out of every list, every request, and the token count, so no component has to check that preview for the tool. Every tool declares in `IToolImplementation.OutboundData` where its arguments go: a chat which read from a mailbox keeps the tools whose data goes further than the mailbox allows from being offered and from running, see `ToolSelectionRules.IsOutboundDataAllowed`. A tool which brings content of a mailbox into the chat raises `ToolExecutionResult.RequiredOutboundDataRestriction`, next to `RequiredProviderConfidence` and `RequiredDataSecurity`. "Searching Mailboxes" in `documentation/Tools.md` explains the mail tools.
A tool which offers itself from the context of a chat instead of being selected, such as `semantic_search`, sets `Activation = ToolActivation.CONTEXT` and tailors its function to each request in `ResolveFunctionAsync`.
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